FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index12_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20868140 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4396080 | 2.6214144 | 5.5452056 | 1 |
| CCTGG | 4374135 | 2.5908706 | 6.235594 | 1 |
| CTTCT | 4582390 | 2.5098817 | 5.573294 | 1 |
| CTGGA | 4174430 | 2.4406939 | 8.946774 | 1 |
| TCCAG | 4115700 | 2.3600307 | 5.7660713 | 2 |
| CTGCT | 4057820 | 2.3112671 | 5.0917296 | 1 |
| CTCCT | 4123400 | 2.3034074 | 7.900426 | 1 |
| CTGGG | 3760650 | 2.2712173 | 8.544562 | 1 |
| CAGGA | 3814955 | 2.2455463 | 5.51656 | 1 |
| CTTCA | 3982520 | 2.196017 | 5.757707 | 1 |
| CCCAG | 3710610 | 2.1700673 | 7.3488946 | 1 |
| CTCCA | 3847855 | 2.1639664 | 8.186572 | 1 |
| CAGAA | 3655945 | 2.083304 | 5.0537486 | 1 |
| CTCTG | 3543790 | 2.018484 | 6.4020348 | 1 |
| CTGGC | 3196700 | 1.8934572 | 5.5754814 | 1 |
| TGGAA | 3223800 | 1.8605732 | 5.215253 | 2 |
| CTGAA | 3240515 | 1.8342161 | 5.5202327 | 1 |
| CTCAG | 3023045 | 1.7334789 | 6.2309184 | 1 |
| CTTTG | 3040070 | 1.6978016 | 5.0622196 | 1 |
| CTGGT | 2882595 | 1.674107 | 5.2597528 | 1 |
| CTTGG | 2821895 | 1.6388544 | 5.426693 | 1 |
| CTCCC | 2723045 | 1.5514011 | 5.197883 | 1 |